Using the prize money for integrating with the larger internet movement in science

Creation of APIs so our CC-BY content can be more easily accessed

I think this point could be expanded to creating infrastructure for internet-based scientific communication. This includes integration with other elements of the internet age scholarly stack such as:

• indexing — see PeerJ's list
• RSS feeds — see this discussion
• PubMed Integration
• LOCKSS/CLOCKSS/Portico — see PeerJ's experience
• Enabling bulk download of an entire project
• Adding paper discussions to Post Publication Peer Review aggregation services.
• Altmetrics to help track project and discussion attention — see this comment
• Search engine optimization
• Document export to MS Word, including an export option for showing the difference between two versions.