Publications

Comments Title Year Journal
0 Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation 2015 Science Signaling
0 Acetylation site specificities of lysine deacetylase inhibitors in human cells 2015 Nat Biotechnol
3 DISEASES: Text mining and data integration of disease–gene associations 2015 Methods
0 Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation 2015 Mol Cell Proteomics
0 Protein-Protein Interaction Databases 2015 Methods in Molecular Biology
0 Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes 2014 Nucleic Acids Research
0 STRING v10: protein-protein interaction networks, integrated over the tree of life 2014 Nucleic Acids Research
0 Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients 2014 Nature Communications
0 A Comparison of Protein Kinases Inhibitor Screening Methods Using Both Enzymatic Activity and Binding Affinity Determination 2014 PLoS ONE
0 KinomeXplorer: an integrated platform for kinome biology studies 2014 Nature Methods
0 Systematic identification of proteins that elicit drug side effects 2014 Molecular Systems Biology
0 Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data 2014 Molecular Systems Biology
0 Predicting Kinase Activity in Angiotensin Receptor Phosphoproteomes Based on Sequence-Motifs and Interactions 2014 PLoS ONE
0 Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population 2014 Drug Saf
0 DoReMi: context-based prioritization of linear motif matches 2014 PeerJ
0 Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population 2014 Drug Saf
0 COMPARTMENTS: unification and visualization of protein subcellular localization evidence 2014 Database
0 Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest 2014 Molecular & Cellular Proteomics
0 eggNOG v4.0: nested orthology inference across 3686 organisms 2013 Nucleic Acids Research
0 STITCH 4: integration of protein-chemical interactions with user data 2013 Nucleic Acids Research
0 Protein-driven inference of miRNA-disease associations 2013 Bioinformatics
0 OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction 2013 13th IEEE International Conference on BioInformatics and BioEngineering
0 TIMP-1 Increases Expression and Phosphorylation of Proteins Associated with Drug Resistance in Breast Cancer Cells 2013 J. Proteome Res.
0 A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk 2013 Cell
0 Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse 2013 Nature
0 The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text 2013 PLoS ONE
0 In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of  -Adrenergic Receptor Signaling 2013 Science Signaling
0 Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text 2013 Journal of the American Medical Informatics Association
0 Reply to 'Mining electronic health records: an additional perspective' 2012 Nat Rev Genet
0 STRING v9.1: protein-protein interaction networks, with increased coverage and integration 2012 Nucleic Acids Research